neurokin.utils package

Subpackages

• neurokin.utils.experiments package
  • Submodules
  • neurokin.utils.experiments.neural_correlates module
    • check_time_cutoff()
    • compute_psd_for_row()
    • create_exclusion_mask()
    • get_csv_first_block_len()
    • get_event_timestamps_freezing_active()
    • get_event_timestamps_freezing_rest()
    • get_event_timestamps_gait()
    • get_event_timestamps_nlm_active()
    • get_event_timestamps_nlm_rest()
    • get_events_dict()
    • get_first_block_df()
    • get_first_last_frame_from_csv()
    • get_freeze_ts_bound()
    • get_idxs_events_to_exclude()
    • get_neural_ch()
    • get_neural_correlate_psd()
    • get_neural_correlates_dict()
    • get_psd_single_event_type()
    • get_single_neural_type()
    • get_start_of_gait()
    • get_ts_from_exclusion_mask()
    • time_to_frame_in_roi()
    • transpose_start_of_gait()
    • traspose_idxs()
  • neurokin.utils.experiments.neural_correlates_plot module
    • add_shades()
    • plot_psd_single_state()
  • neurokin.utils.experiments.neural_states_helper module
    • compute_ci()
    • compute_duration()
    • compute_events_percentage()
    • compute_percentage()
    • condense_distribution_event_types()
    • get_group_split()
    • get_per_animal_psds_df()
    • get_runs_list()
    • get_state_graph_stats()
    • load_dataset()
    • mean_psds()
    • save_data()
  • neurokin.utils.experiments.spider_factory module
    • get_polygon_corners()
    • plot_spider_single_trace()
    • spider_factory()
  • Module contents
• neurokin.utils.features_extraction package
  • Submodules
  • neurokin.utils.features_extraction.commons module
    • compute_acceleration()
    • compute_angle()
    • compute_angle_acceleration()
    • compute_angle_correlation()
    • compute_angle_phase()
    • compute_angle_velocity()
    • compute_phase_at_max_amplitude()
    • compute_speed()
    • compute_tang_acceleration()
    • compute_velocity()
  • neurokin.utils.features_extraction.core module
    • FeatureExtraction
      • FeatureExtraction.compute_feature()
      • FeatureExtraction.run_feat_extraction()
    • MyFeat
      • MyFeat.compute_feature()
      • MyFeat.extraction_target
    • MyFeat2
      • MyFeat2.compute_feature()
      • MyFeat2.extraction_target
  • neurokin.utils.features_extraction.feature_extraction module
    • bin_feature()
    • extract_features()
    • get_extractor_obj()
  • Module contents
• neurokin.utils.helper package
  • Submodules
  • neurokin.utils.helper.load_config module
    • keys2string()
    • read_config()
  • Module contents
• neurokin.utils.kinematics package
  • Submodules
  • neurokin.utils.kinematics.event_detection module
    • get_peak_boundaries_scipy()
    • get_toe_lift_landing()
    • lowpass_array()
    • median_distance()
  • neurokin.utils.kinematics.import_export module
    • create_empty_df()
    • get_c3d_labels()
    • import_c3d()
    • import_dlc_df()
  • neurokin.utils.kinematics.kinematics_processing module
    • check_correct_columns_extraction()
    • get_unilateral_df()
    • shift_correct()
    • tilt_correct()
  • Module contents
• neurokin.utils.neural package
  • Submodules
  • neurokin.utils.neural.exporting module
    • export_neural_data_to_bin()
  • neurokin.utils.neural.importing module
    • import_binary_to_float32()
    • import_open_ephys_channel_data()
    • import_tdt_channel_data()
    • time_to_sample()
  • neurokin.utils.neural.neural_plot module
    • plot_spectrogram()
    • plot_welch()
  • neurokin.utils.neural.processing module
    • average_block()
    • calculate_power_spectral_density()
    • find_closest_index()
    • find_closest_smaller_index()
    • get_average_amplitudes()
    • get_median_distance()
    • get_spectrogram_data()
    • get_stim_timestamps()
    • get_timestamps_stim_blocks()
    • parse_raw()
    • running_mean()
    • running_mean_2D()
    • simply_mean_data_binarize()
    • trim_equal_len()
  • Module contents

Module contents